The right accounting software matters more than you realize.

Let’s get real. How to choose the right accounting software for your business can feel a bit like a minefield. There’s so much out there. And it’s changing all the time at light speed. Trust me, I know.

As a small business owner running my own firm and helping my clients with their internal accounting and bookkeeping needs, I’ve had my fair share of experiences with software selection.

When I first started in accounting, I worked with all kinds of systems across different companies – some were great, some … well, not so much. But it wasn’t until I started my own business that I really began to pay close attention to what small businesses need when it comes to accounting software. That’s when it hit me: the options are endless, and the decision can be downright overwhelming.

The good news? You don’t have to figure it out alone. I’ve been through the trial and error process, and I’m here to help you navigate this digital jungle. By the end of this post, you’ll be armed with everything you need to choose the accounting software that’s right for your business – without feeling like you’re swimming in a sea of tech jargon. Shall we begin?

How to choose the right accounting software for your business
How to Choose the Right Accounting Software for Your Business

Why the Right Accounting Software Matters More Than You Think

Before you jump in and start downloading free trials or signing up for subscriptions, let’s talk about some things you should seriously consider first.

How Established Are You?

This might sound obvious, but one of the first questions you need to ask yourself is: where are you on your business journey?

If you’re just starting out, you might not have the budget to splurge on all the bells and whistles of high-end accounting software. And that’s okay! There are plenty of free or budget-friendly options out there.

But here’s the kicker – don’t just pick something because it’s free or cheap right now. You want to think about where your business is heading. Can the software you choose today grow with you? 

Will it still meet your needs when your business scales up? For instance, starting with a free option like Wave can be tempting, but if your long-term goal is to use something more powerful like QuickBooks or Xero, make sure the transition won’t be a nightmare.

Trust me, switching accounting software later can be a headache you do not want.

Payroll Considerations

If your business has employees (or you plan to hire soon), payroll is a feature you absolutely need to consider. Some accounting software, like QuickBooks and Xero, offer built-in payroll processing, while others may require a separate integration or app. 

Payroll isn’t just about cutting checks (or direct deposits); it’s about tax compliance, filing forms, and keeping everything legal.

Make sure whatever system you choose either has payroll built in or integrates with a reliable payroll tool. There’s nothing worse than realizing halfway through your first tax season that your accounting software doesn’t quite handle payroll the way you need it to.

Integrations: Do Your Apps Talk to Each Other?

In today’s world, most businesses don’t operate on just one piece of software. You’ve probably got an invoicing app, a CRM, a project management tool – maybe even a POS system if you sell products. The accounting software you choose needs to integrate with all of these tools to keep things running smoothly.

QuickBooks and Xero, for example, integrate with hundreds of apps, from payroll systems to CRMs to inventory management tools. Others might be a little more limited in this regard, but if you don’t need heavy integration, that could be fine for your business. 

The point is, don’t forget about the broader ecosystem of tools your business relies on – make sure everything can “talk” to your accounting software.

At the end of the day, the accounting software you choose has to make sense for both your current needs and your future goals. Maybe you’re just starting out and can’t afford to drop big bucks on a premium option right now – that’s okay. 

But think long-term. Picking a scalable option now will save you a lot of headaches down the road when your business grows.

And remember: test out those free trials. Most software companies offer at least a 30-day trial, so take advantage of it! Play around with the features, see what you like, and figure out what works for your specific needs. Your future self will thank you.

Shopify logo on a screen
Do your apps talk to each other?

Features You Actually Need (And Ones You Don’t)

Let’s cut to the chase – accounting software can dazzle you with a ton of features. Some of them are absolutely necessary, while others? Well, they might just be flashy extras you’ll never use. 

So, before you get lured in by all the bells and whistles, let’s break down the essential features you actually need and the ones that might sound cool but won’t move the needle for your business.

The Must-Haves for Every Business

There are a few features that every business, no matter the size, should look for in accounting software. These are the bread and butter of keeping your finances in check and ensuring that your day-to-day operations run smoothly.

Invoicing and Billing Let’s face it – getting paid is pretty important, right? The ability to create, send, and track invoices is one of the most fundamental features you’ll need. Most accounting software will offer this, but pay attention to how customizable the invoices are and whether you can set up automated invoicing (because why spend time on something software can do for you?).


Bonus points if the software allows clients to pay directly from the invoice through an online payment gateway. The less friction between sending the invoice and getting paid, the better.

Expense Tracking Nobody likes chasing down receipts, but keeping track of your expenses is crucial for tax time and for understanding where your money is going. Your accounting software should make this as painless as possible, allowing you to upload receipts, categorize expenses, and generate expense reports with ease. 

Many tools, like Xero and Zoho Books, even offer mobile apps that let you snap a photo of a receipt on the go.


Pro tip: Look for software that can auto-categorize expenses based on past entries to save time on data entry.

Bank Reconciliation This one’s a biggie. Reconciling your bank accounts with your accounting records is a critical process to ensure your books are accurate. Good software should offer automatic bank feeds, where your transactions are pulled in directly from your bank. 

Then, it’s just a matter of matching them up with the records in your accounting system. QuickBooks and Xero, for example, make this process pretty smooth.

Financial Reporting Financial reports are like the GPS of your business – they show you where you are and help you plan where to go next. Basic reports like profit and loss statements, balance sheets, and cash flow statements are non-negotiable. 

But beyond that, look for software that allows you to customize reports or create dashboards so you can get a quick snapshot of your business’s financial health.


Make sure the reports are easy to understand. It’s great if the software offers fancy analytics, but if it feels like you need a degree in finance just to read them, that’s not going to help much.

Tax Management Taxes. The one thing we all love to hate. Your accounting software should make tax time as painless as possible by helping you track sales tax (if applicable), and even better, calculate and prepare tax forms automatically. 

Some tools, like QuickBooks, can even help you file taxes directly through the software. Others may integrate with tax preparation apps.


Whatever you choose, make sure the software is up to date on tax regulations in your region – this can save you a ton of headaches later. And your tax accountant will thank you for this feature.

Payroll (Do You Need It?)

Payroll is one of those features that’s either absolutely critical or completely unnecessary, depending on your business. If you have employees (or plan to soon), payroll functionality is a must-have. 

Look for software that can handle direct deposits, tax withholdings, and the automatic filing of payroll forms. Many platforms, like QuickBooks and Xero, have built-in payroll features, while others may require a third-party integration.

If you don’t have employees yet, this feature might be something you can skip – for now. Just make sure you can add it later when the time comes.

The Nice-to-Haves (But Maybe Not Necessary Right Away)

Once you’ve got the must-have features nailed down, there are a few extras that might be useful but aren’t dealbreakers if they’re missing. These are the “nice-to-haves,” and whether or not you need them depends on how you run your business.

Time Tracking If you’re in a service-based business, especially one that bills clients by the hour, built-in time tracking can be a game-changer. FreshBooks, for example, has time tracking baked right in, so you can log hours and easily convert them into invoices. If you don’t bill by the hour, this might be one feature you can live without.

Inventory Management Running an e-commerce business or selling physical products? You’ll want software with built-in inventory management. This feature helps you track stock levels, manage purchase orders, and avoid the dreaded “out of stock” scenario. QuickBooks and Zoho Books both offer solid inventory tracking options, but if you’re just selling the occasional product, you may not need this right away.

Multi-Currency Support If you’re doing business internationally, multi-currency support is essential. It allows you to invoice, pay, and report in different currencies without manually converting everything (which, let’s be honest, is a pain). If you’re strictly domestic, you can skip this, but it’s nice to have if you plan to expand globally.

Third-Party Integrations This is something you might not realize you need until you don’t have it. If your business uses other tools – like a CRM, project management system, or even an e-commerce platform – your accounting software needs to play nice with them.

QuickBooks and Xero lead the pack in terms of the sheer number of integrations, but don’t overlook Zoho Books if you’re already using other Zoho apps.

The key here is to think about the broader ecosystem of your business tools. Does everything talk to each other, or will you end up with a patchwork of disconnected systems?

The trick to choosing the right accounting software features is balancing what you need right now with what you might need in the future.

Start with the essentials – invoicing, expense tracking, and financial reporting – but don’t lose sight of features that could become more important as your business grows, like payroll or inventory management. 

And, of course, don’t get sucked into the trap of paying for features you’ll never use. Stay focused on what will actually move your business forward.

So How to Choose the Right Accounting Software for Your Business

Alright, so we’ve talked about features, but now comes the big question: which accounting software should you actually choose? There’s no one-size-fits-all answer, but I can help you narrow it down based on what’s most important for your business. 

Let’s dive into some of the most popular options out there and how to make the right pick for your unique situation.

QuickBooks logo on a screen
QuickBooks by Intuit is one of the bigger players out there

A Look at the Top Players

First, let’s talk about some of the top accounting software options for small businesses. These are the heavy hitters – each one has its strengths, and which one is right for you depends on what you value most.

QuickBooks Online
QuickBooks is like the OG of small business accounting software. It’s widely used, and for good reason: it’s intuitive, packed with features, and integrates with just about everything. 

Whether you need to track expenses, invoice clients, or run payroll, QuickBooks has got you covered. And if you plan to scale your business, QuickBooks grows with you, offering more advanced features as you need them.

That said, it can get a bit pricey, especially if you need additional users or want the full suite of features. But if you’re looking for reliability and a solid reputation, it’s hard to go wrong with QuickBooks.

Xero
Xero has been gaining popularity, especially for businesses that appreciate a clean, modern interface. It’s a cloud-based tool that offers great reporting, expense tracking, and payroll options, all while integrating smoothly with other apps. 

One of its standout features is its flexibility with integrations, making it a good fit if you already have a tech stack in place that you want to keep.

Xero’s pricing is competitive, and it offers a solid balance of usability and functionality. If you want something scalable but maybe with a bit more flair than QuickBooks, Xero could be a great option.

FreshBooks
FreshBooks is known for being particularly user-friendly, and it’s a favorite among freelancers and service-based businesses. 

It really shines with its time-tracking and invoicing features, which makes sense since it was originally built for solo entrepreneurs who needed an easy way to track their time and bill clients.

While it’s not as feature-rich when it comes to accounting compared to QuickBooks or Xero, it’s perfect for small businesses that don’t need complex bookkeeping tools. If your main priority is getting paid quickly and managing client relationships, FreshBooks is a strong contender.

Zoho Books
Zoho Books is a great option if you’re already using other Zoho apps, like Zoho CRM or Zoho Projects. It’s affordable and comes with a decent set of features, including invoicing, expense tracking, and even inventory management. 

It’s especially useful for businesses that need an all-in-one solution for managing different aspects of their operations.

While it may not be as well-known as QuickBooks or Xero, Zoho Books is a solid choice if you’re working on a tight budget and already using Zoho’s suite of products.

Sage
Sage has been around for a long time, and it’s trusted by businesses of all sizes. While it’s often considered more of a heavy-duty option, it’s become more accessible for small businesses with the release of cloud-based products like Sage Accounting. 

Sage is strong on features like inventory management and compliance, so if your business needs those from the get-go, it’s worth considering.

How to Narrow It Down

Now that you’ve got a sense of the big players, how do you actually pick one? Here are a few things to consider to help you narrow down the choices:

What’s Your Budget?
Let’s be real: price matters. You want to make sure that whatever software you choose fits within your budget, not just now, but in the long run.

QuickBooks and Xero offer a range of pricing tiers, but if you’re just starting out and watching your spending, Zoho Books or FreshBooks might be a better fit.

That said, don’t just go for the cheapest option. If you need advanced features like payroll or inventory management, you’ll want to make sure the software can handle that without blowing your budget once you scale up.

How Tech-Savvy Are You?
Some accounting software is more user-friendly than others. If you’re not exactly a tech wizard, you might want to avoid something like Sage, which can be a bit more complex to set up. QuickBooks and FreshBooks, on the other hand, are known for their intuitive design and easy learning curve.

If you’re someone who likes to tinker with tech and get into the nitty-gritty, then Xero or Zoho Books might appeal to you because of their flexibility with integrations and customizations.

Do You Need Payroll and Inventory Features?
If your business involves managing employees or keeping track of products, payroll and inventory management are features you can’t afford to overlook.

QuickBooks and Xero both offer strong payroll and inventory options, while FreshBooks, for instance, is more tailored to service-based businesses and may not be the best fit if you need heavy-duty inventory tracking.

What Other Tools Do You Use?
You probably already use a handful of apps to run your business, whether it’s a CRM, project management software, or a POS system. Make sure the accounting software you choose can integrate with these tools.

QuickBooks and Xero offer the widest range of integrations, but Zoho Books is a great choice if you’re already part of the Zoho ecosystem.

Online vs. Desktop

A quick word about cloud-based (online) vs. desktop software: Unless you have a specific need for desktop software (like, I don’t know, you run a spy agency – kidding!), go with a cloud-based option. 

Cloud-based accounting software, like QuickBooks Online, Xero, and FreshBooks, allows you to access your data from anywhere, on any device. It also updates automatically, so you’re always using the latest version.

Desktop software, like QuickBooks Desktop, still has its place, especially if you need more robust features or if you’re dealing with sensitive data and prefer to keep everything offline. But for most small businesses, cloud-based software is going to be the more flexible, future-proof choice.

woman with curly hair and glasses smiling and sitting at a desk smiling and looking down at documentation
Compare accounting software like a pro

How to Compare Accounting Software Like a Pro

I get it – comparing accounting software can feel like an overwhelming task. It’s like shopping for a car or picking out the perfect laptop. There are so many factors to consider, and it’s easy to get caught up in all the tech jargon. But don’t worry, I’m here to help you simplify the process.

Step 1: Make a Checklist of Must-Haves

First things first, create a checklist of the features you absolutely need based on your business’s unique needs. Remember when we talked about the basics? Things like invoicing, expense tracking, bank reconciliation, and financial reporting are non-negotiable for most businesses.

But beyond the basics, think about the other essentials that apply to your business. Do you need built-in payroll? How about inventory management? Are integrations with other apps critical for you? Write all these down, so you have a clear idea of what you’re looking for before you even start comparing.

Step 2: Take Those Free Trials Seriously

Here’s where you roll up your sleeves and get hands-on. Most accounting software offers free trials or demo versions – this is your chance to really dig in and test them out. I know, I know, it’s tempting to set up an account, click around a bit, and forget about it. But I highly recommend you go a bit deeper.

Set aside some time to actually input dummy data, run through the features you care about, and see how intuitive the system feels. Does the invoicing process make sense? Is it easy to connect your bank accounts and reconcile transactions? 

Does the software generate reports that are actually useful for you? These are all questions you want to answer during the trial period.

Step 3: Compare Pricing – But Don’t Just Look at the Sticker Price

We talked earlier about how important your budget is when choosing accounting software, and this is where it really comes into play. But don’t just focus on the price tag – look at what you’re getting for your money.

For example, one might seem pricier than another at first glance, but it could be worth the extra investment if you need the scalability, integrations, and advanced features.

On the other hand, if you’re a freelancer who just needs basic invoicing and expense tracking, a more affordable tool for your needs.

Remember to also factor in any potential additional costs, like paying for extra users, add-on features (like payroll), or third-party integrations. These costs can sneak up on you, so it’s best to account for them early on.

Step 4: Look at Customer Support and Community

One often overlooked aspect of choosing accounting software is the quality of customer support. When something goes wrong (and at some point, it probably will), you want to know that help is available and accessible. 

Some platforms, like Xero and FreshBooks, are known for their solid customer support. And QuickBooks also offers a lot of support options. I’ve had to use them and I have no complaints.

In addition to official support, look for active user communities. A strong community can be a lifesaver, offering forums, user groups, and how-to articles when you need guidance or tips on best practices. This is particularly helpful if you’re using a system that might not have the world’s greatest customer service response time.

Step 5: Think About the Long-Term

When comparing accounting software, don’t just think about your immediate needs – think long-term. Ask yourself, will this software grow with my business? Will it allow me to add features, users, or more complex reporting as my business scales? This is where scalability becomes important.

For example, QuickBooks and Xero offer robust features that work well for small businesses, but they also scale up easily as your company grows. Others might not have the power you need once your business expands or you need more advanced financial tools.

Moving from one software to another is not only time-consuming but can also be costly if data migration becomes a hassle. So, if you have big plans for your business (and I’m sure you do!), make sure you’re picking a tool that can keep up with you as you grow.

Step 6: Ask Around

Don’t be afraid to ask for recommendations. Reach out to other small business owners or professionals in your industry and ask what they’re using. Often, real-world experiences can give you insights that a shiny website or sales pitch won’t. Or ask your bookkeeper or accountant. This is their daily bread.

Step 7: Trust Your Gut

Finally, after you’ve gone through your checklist, tried the free trials, compared prices, and weighed the pros and cons, trust your gut. You’ll likely know when you’ve found the right software for you. If it feels easy to use, matches your business needs, and doesn’t blow your budget, then congratulations – you’ve found your match!

Don’t Just Choose – Commit!

Alright, so you’ve done your homework, tried out the free trials, compared features and pricing, and finally settled on the accounting software that works best for your business. Now what? 

Well, the next step is all about commitment – and no, I’m not talking about wedding vows. I’m talking about fully embracing your new accounting system, because here’s the thing: no software, no matter how fancy, is going to magically organize your finances unless you’re committed to making it work for you.

Get Comfortable with Your Choice

Once you’ve picked your software, it’s time to get familiar with it. Don’t just sign up and leave it to gather digital dust in the background while you continue doing things the old way. Take the time to explore all the features and set things up properly from the get-go. It’s worth it.

Most accounting software platforms come with onboarding resources like tutorials, webinars, or help centers. Make use of these tools to get up to speed. Trust me, the last thing you want is to be scrambling during tax season because you never fully learned how to use half the features the software offers.

Train Your Team (If You Have One)

If you’ve got employees, bookkeepers, or anyone else who’s going to be using the software, make sure they’re all on the same page. Have a training session to walk them through how to use it, or assign someone to be the go-to person for software questions.

A lot of platforms, like QuickBooks and Xero, offer multi-user capabilities, which is great for sharing the workload. But you want to make sure everyone is entering data consistently and following the same procedures. Inconsistent bookkeeping is a fast track to chaos, and nobody needs more chaos in their life.

hands holding a tablet with database and charts and graphs
Don’t just choose – commit!

Customizing Your Software to Fit Your Business

One of the biggest mistakes I see small business owners make is not taking the time to customize their accounting software. Most platforms come with basic templates, but did you know you can often tailor things like invoices, expense categories, and reports to better suit your specific business needs?

For example, if you run a service-based business, you might want to include a time-tracking feature and customize your invoices to reflect project names or hourly rates. If you sell products, customizing your inventory and sales tax settings will save you tons of headaches down the line.

By setting up the software to work the way you need it to, you’ll find it’s not just a tool – it becomes a part of your business’s daily rhythm.

Automate Where You Can

I am a huge fan of automation. Most accounting software has built-in automation features, and I highly recommend using them. Why manually do something that software can handle for you?

Here are a few ways you can put automation to work:

  • Recurring Invoices: If you bill the same clients monthly, set up recurring invoices so they go out automatically.
  • Expense Tracking: Many platforms can auto-categorize expenses based on past entries, and some even allow you to set up rules (for example, every time you charge your business card at a gas station, it’s automatically categorized as a “Travel” expense).
  • Bank Reconciliation: With bank feeds, your transactions sync automatically with your accounting system, so all you have to do is review and approve them instead of manually entering every little thing.

Automating these kinds of tasks frees up your time to focus on the bigger picture – like growing your business.

Regular Maintenance Is Key

Once your accounting software is up and running, the key to keeping everything smooth is consistency. Set aside regular time to maintain your books, reconcile your bank accounts, and review your reports. It doesn’t have to be an all-consuming task. A weekly check-in is often enough to keep things in good order.

If you let your bookkeeping slide, it becomes a much bigger hassle to clean things up later. Plus, when you’re keeping up with it regularly, you can spot potential issues early on – like cash flow problems or overdue invoices – before they become major headaches.

However, don’t beat yourself up if this becomes too much for you. I think outsourcing your bookkeeping is one of the smartest things to do as soon as your business starts picking up. And when you’re ready for this step make sure you choose a professional bookkeeper.

Get the Most Out of Customer Support

Even if you’ve fully committed to using your new accounting software, there are always going to be moments where you get stuck. That’s why it’s important to lean on customer support when you need it.

A lot of platforms offer live chat or phone support, but don’t overlook their knowledge bases or user forums. Sometimes, the answer to your problem is just a quick search away. And if the issue is more complicated, don’t hesitate to reach out to support. They’re there to help!

And If It Doesn’t Work Out…

Let’s be real – sometimes things don’t go as planned. Maybe the software you chose isn’t quite living up to your expectations, or your business outgrows it sooner than you thought. If that happens, don’t panic.

I have switched software before and so have my clients. While it can be a hassle, it’s not the end of the world. Most platforms allow you to export your data, and there are often tools or services that help with migrating to a new system.

The important thing is to recognize when something isn’t working and take action before it becomes a bigger problem.

Commitment Leads to Confidence

At the end of the day, fully committing to your accounting software is about building confidence in your financial processes. When you’re comfortable with the system you’re using, it becomes a tool that helps you run your business more efficiently. 

You can rely on accurate reports, handle payroll smoothly, and keep your expenses in check – all of which frees up your time and mental energy to focus on what you’re really passionate about: growing your business.

Conclusion

So, here we are at the finish line. Choosing the right accounting software for your business might feel overwhelming, but I promise, with a little research and some hands-on testing, you’ll find the one that fits your needs like a glove. 

Remember, the key is to know where your business stands now, think about where it’s heading, and choose a solution that can grow with you.

Whether you go with a big player like QuickBooks or Xero, a more budget-friendly option like FreshBooks, or something tailored for your specific needs, like Zoho, the most important thing is that you commit to it and make it work for you.

Don’t be afraid to start with something small and simple if that’s where you’re at right now – just make sure it’s scalable. And when you do choose, dive in fully. Set it up right, automate what you can, and make sure your team is on board. Your accounting software should be a tool that helps you grow, not just something you check off your to-do list.

In the end, it’s not about picking the “perfect” software – it’s about finding the one that’s perfect for your business, and then making it a part of your daily operations. So, go ahead and start exploring your options, run those free trials, and trust your gut. You’ve got this!

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